PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 153aa    MW: 18529.9 Da    PI: 10.1552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-1665109549
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     ++ +r+v +  R ++++ KAeELSvLC++e+ +++fs+++k  ey
  XP_009801509.1  65 DECRRSVVLQERMETLFRKAEELSVLCGVEIGIVVFSPDQKNVEY 109
                     5789***********************************997666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-853113IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.94253113IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-75575IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-1756147IPR002100Transcription factor, MADS-box
PfamPF003191.4E-1465109IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-77590IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-790111IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MFRHIQPNYY LNKRVNTPFA NYIYLFICYH GSMYTLFHTF EHSQLQKKVH FVSSLKKIKI  60
AMLVDECRRS VVLQERMETL FRKAEELSVL CGVEIGIVVF SPDQKNVEYE WPPRDKFKQL  120
LMRFLDKPLV ERLKKLTTNE MFLRKEMEKT KKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801509.11e-111PREDICTED: agamous-like MADS-box protein AGL36
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.19e-15AGAMOUS-like 36